Publications

2024

M. Elliott, J.A.B. Fortes, “Toward Reliable Biodiversity Information Extraction from Large Language Models” 2024 IEEE 20th International Conference on e-Science (e-Science), Osaka, Japan, 2024, pp. 1-10.

2023

M. Elliott, J.H. Poelen, J.A.B. Fortes, “Signing Data Citations Enables Data Verification and Citation Persistence” Scientific Data 10, Article 419, June 27 2023.
M. Elliott, J.A.B. Fortes, “Using ChatGPT with Confidence for Biodiversity-Related Information Tasks“, Biodiversity Information Science and Standards 7: e112926, September 19 2023.
S. Islam, J. Beach, E.R. Ellwood, J.A.B Fortes, L. Lannom, G. Nelson, B. Plale, 2023 “Assessing the FAIR Digital Object Framework for Global Biodiversity Research“, Research Ideas and Outcomes 9: e108808, September 12 2023.
E.R. Ellwood, W. Addink, J. Bates, A. Bentley, J. Buschbom, A. Freire-Fierro, J.A.B Fortes, D. Jennings, K. Lehnert, B. Ludäscher, K. Ma, J. Macklin, A. Mast, J. Miller, G. Nelson, N. Nicolson, J. Pandey, D.L. Paul, S. Poo, R. Rabeler, P.S. Soltis, E. Wallis, M.S. Webster, A. Young, B.M. Zimkus, “Connecting the Dots: Aligning Human Capacity through Networks toward a Globally Interoperable Digital Extended Specimen (DES) Infrastructure” Biodiversity Information Science and Standards 7: e112390, September 8 2023.

2022

A.R. Hardisty, E.R. Ellwood, G. Nelson, B. Zimkus, J. Buschbom, W. Addink, “Digital Extended Specimens: Enabling an Extensible Network of Biodiversity Data Records as Integrated Digital Objects on the Internet” BioScience 72 (10), 978-987.
R. Hirabayashi, J.A.B. Fortes, S. Yamaguchi, “User-level Control of Block-level Cache Aggressiveness” Journal of Information Processing 30, 782-786.

2021

R. Hirabayashi, J.A.B. Fortes, S. Yamaguchi, “Aggressiveness-Controllable Block-Level Cache” 2021 Ninth International Symposium on Computing and Networking Workshops (CANDARW), IEEE, 434-438, DOI: 10.1109/CANDARW53999.2021.00080.

2020

I. Alzuru, A. Matsunaga, M. Tsugawa, J.A.B Fortes, “General Self-aware Information Extraction from Labels of Biological Collections” 2020 IEEE International Conference on Big Data (Big Data), 3035-3044.
R. Hirabayashi, M. Nakagami, J.A.B Fortes, S. Yamaguchi, “I/O performance evaluation of dynamic data migration in hybrid DRAM/NVRAM memory organizations” IEICE Proceedings Series 63 (O2-3).
S. Sridharan, S. Gaonkar and J. A. B. Fortes, “Bandit-based Run-time Adaptation of Cache Replacement Policies in Content Management Systems,” 2020 Eighth International Symposium on Computing and Networking (CANDAR), Naha, Japan, 2020, pp. 79-88, doi: 10.1109/CANDAR51075.2020.00017.
M. Nakagami, J.A.B Fortes, S. Yamaguchi, “Performance Improvement of Hadoop ext4-based Disk I/O” 2020 Eighth International Symposium on Computing and Networking (CANDAR), IEEE, 181-187, DOI: 10.1109/CANDAR51075.2020.00032
M. Nakagami, J.A.B. Fortes and S.Yamaguchi, “Job-aware File-storage Optimization for Improved Hadoop I/O Performance,” IEICE Transactions on Information and Systems, 2020/06/30, DOI: 10.1587/transinf.2019EDP7337.
R.J. Figueiredo, N. Kapadia, J.A.B Fortes, “Towards coordinated work on the grid: Data sharing through virtual file systems” Process Coordination and Ubiquitous Computing, 151-162.
M. Elliott, J.H. Poelen, J.A.B. Fortes, “Toward reliable biodiversity dataset references” Ecological Informatics 59, 101132, ISSN 1574-9541, https://doi.org/10.1016/j.ecoinf.2020.101132.
M. Elliott, J.H. Poelen and J.A.B Fortes, ” Reliable Dataset Identifiers Are Essential Building Blocks for Reproducible Research” 4th Annual Digital Data in Biodiversity Research, 1-3 June 2020.

2019

I. Alzuru, R. Stephens, A. Matsunaga, M. Tsugawa, P. Flemons and J. A. B. Fortes, “Quality-aware Human-Machine Text Extraction for Biocollections using Ensembles of OCRs”, eScience 15th International Conference, September 24 – 27, 2019.
G. Lee and J. A. B. Fortes, “Improving Data-Analytics Performance Via Autonomic Control of Concurrency and Resource Units”, ACM Transactions on Autonomous and Adaptive Systems, vol. 13, no. 3, 2019.
D. Ding, R. J. Figueiredo, and M. Conti, “SAND: Social-Aware, Network-Failure Resilient, and Decentralized Microblogging System”, Future Generation Computer Systems, vol. 93, no. April 2019, p. 637-650, 2019.

2018

E. Thessen, J. H. Poelen, M. Collins, and J. Hammock, “20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration”, PeerJ Computer Science, vol. 4, no. e164, 2018.
M. Nakagami, J. Kon, G. Lee, J. A. B. Fortes, and S. Yamaguchi, “File Placing Location Optimization on Hadoop SWIM”, in 9th International Workshop on Advances in Networking and Computing (WANC”18), 2018.
C. Seltmann, et al., “Georeferencing for Research Use (GRU): An integrated geospatial training paradigm for biocollections researchers and data providers”, Research Ideas and Outcomes, vol. 4, p. e32449, 2018.
A. James, et al., “Herbarium data: Global biodiversity and societal botanical needs for novel research”, Applications in Plant Sciences, vol. 6, p. e1024”n/a, 2018.
J. Kon, G. Lee, J. A. B. Fortes, and S. Yamaguchi, “A Kernel-based Method of Resolving Performance Inefficiencies in Mining Frequent-patterns in Encrypted Data”, in 9th International Workshop on Advances in Networking and Computing (WANC”18), 2018.
S. Aditya, K. Subratie, and R. J. Figueiredo, “PerSoNet: Software-defined Overlay Virtual Networks Spanning Personal Devices Across Social Network Users”, in IEEE CloudCom, 2018.
M. Collins, R. Tarvin, M. Kandziora, W. Dahdul, and D. Paul, “Phenomap – Challenges and Successes in Bringing Together Multiple Data Projects to Build New Visualizations of Phenotypic Information and Specimen Records”, Biodiversity Information Standards (TDWG). 2018.
M. Collins, G. Yeole, P. B Frandsen, R. B Dikow, S. Orli, and R. J. Figueiredo, “A Pipeline for Deep Learning with Specimen Images in iDigBio – Applying and Generalizing an Examination of Mercury Use in Preparing Herbarium Specimens”, Biodiversity Information Science and Standards, vol. 2, p. e25699, 2018.
K. Subratie and R. J. Figueiredo, “Towards Island Networks: SDN-Enabled Virtual Private Networks with Peer-to-Peer Overlay Links for Edge Computing”, in Proceedings of International Conference on Internet and Distributed Computing Systems (IDCS), 2018.
D. Ding, R. J. Figueiredo, and M. Conti, “Wide-scale Internet Disconnection: Impact and Recovery on Social-based P2P Overlays”, IEEE Transactions on Network Science and Engineering, 2018.

2017

M. Collins, N. Nicholson, J. Poelen, A. Thompson, J. Hammock, and A. Thesen, “Building Your Own Big Data Analysis Infrastructure for Biodiversity Science”. 2017.
S. Aditya and R. J. Figueiredo, “Frugal: Building degree-constrained overlay topology from social graphs”, in 1st IEEE International Conference on Fog and Edge Computing (ICFEC), Madrid, Spain, 2017.
K. Subratie, S. Aditya, S. Mahesula, R. J. Figueiredo, C. C. Carey, and P. C. Hanson, “GRAPLEr: A distributed collaborative environment for lake ecosystem modeling that integrates overlay networks, high-throughput computing, and WEB services”, Concurrency and Computation: Practice and Experience, vol. 29, no. 13, 2017.
G. Lee and J. A. B. Fortes, “Hierarchical Self-Tuning of Concurrency and Resource Units in Data-Analytics Frameworks”, in International Conference on Autonomic Computing (ICAC), Columbus, OH, USA, 2017, vol. IEEE, p. 49-58 (Best Student Paper Award).
K. Jeong, R. J. Figueiredo, and K. Ichikawa, “PARES: Packet Rewriting on SDN-Enabled Edge Switches for Network Virtualization in Multi-Tenant Cloud Data Centers”, The IEEE International Conference on Cloud Computing (CLOUD) . 2017.
K. Jeong, K. Ichikawa, and R. Figueiredo, “On the Performance and Cost of Cloud-Assisted Multi-path Bulk Data Transfer”, in IEEE International Conference on Cloud Computing Technology and Science (CloudCom), 2017.
K. Ichikawa, et al., “PRAGMA-ENT: An International SDN testbed for cyberinfrastructure in the Pacific Rim”, Concurrency and Computation: Practice and Experience, vol. 29, no. 13, 2017.
I. Alzuru, A. Matsunaga, M. Tsugawa, and J. A. B. Fortes, “SELFIE: Self-aware Information Extraction from Digitized Biocollections”, in 13th IEEE International Conference on eScience, 2017.
K. Nakashima, J. Kon, G. Lee, J. Fortes, and S. Yamaguchi, “A Study on Big Data I/O Performance with Modern Storage Systems”, in IEEE International Conference on Big Data, Boston, MA, USA, 2017.
I. Alzuru, A. Matsunaga, M. Tsugawa, and J. A. B. Fortes, “Task Design and Crowd Sentiment in Biocollections Information Extraction”, in 3rd IEEE International Conference on Collaboration and Internet Computing, 2017.
K. Subratie, S. Aditya, S. Sabogal, T. Theegala, and R. J. Figueiredo, “Towards Dynamic, Isolated Work-groups for Distributed IoT and Cloud Systems with Peer-to-Peer Virtual Private Networks”, in Sensors to Cloud Architectures Workshop (SCAW-2017), Austin, USA, 2017.

2016

M. Collins, “Accessing Digital Collections Data Sources for Research: A Tour of iDigBio Data Services”, in Island Biology 2016, II International Conference on Island Evolution, Ecology, and Conservation, University of the Azores at Angra do Heroísmo, Terceira Island, Azores, Portugal, 2016.
K. Read, et al., “Building the Team for Team Science”, Ecosphere, vol. 7, no. 3, 2016.
I. Alzuru, A. Matsunaga, M. Tsugawa, and J. A. B. Fortes, “Cooperative Human-Machine Data Extraction from Biological Collections”, in IEEE 12th International Conference on eScience, 2016.
Y. Wang, Y. Xia, S. Chen, M. Tsugawa, and J. A. B. Fortes, “Demonstrating Scalability and Efficiency of Pack-centric Resource Managment for Cloud”, in 2016 IEEE 9th International Conference on Cloud Computing (CLOUD), 2016, p. 849-854.
A. Metcalf, F. Fowze, T. Yavuz, and J. Fortes, “Extracting Configuration Parameter Interactions using Static Analysis”, in 2016 IEEE 24th International Conference on Program Comprehension, 2016, p. 1-4.
M. Collins, “GUODA: A Unified Platform for Large-Scale Computational Research on Open-Access Biodiversity Data”, in Biodiversity Information Standards (TDWG) 2016 Annual Conference, Santa Clara de San Carlos, Costa Rica, 2016.
G. Lee and J. A. B. Fortes, “Hadoop Performance Self-Tuning Using a Fuzzy-Prediction Approach”, in IEEE International Conference on Autonomic Computing (ICAC), Germany, 2016.
Y. Xia, M. Tsugawa, J. Fortes, and S. Chen, “Large-Scale VM Placement with Disk Anti-Colocation Constraints using Hierarchical Decompostion and Mixed Integer Programming”, IEEE Transactions on Parallel and Distributed Systems, vol. PP, no. 99, p. 1-1, 2016.
M. Collins, “Mining Whole Museum Collections Datasets for Expanding Understanding of Collections with the GUODA Service”, in 31st Annual Meeting 2016 of the Society for the Preservation of Natural History Collections (SPNHC), Berlin, Germany, 2016.
K. Jeong and R. J. Figueiredo, “Self-configuring Software-defined Overlay Bypass for Seamless Inter- and Intra-cloud Virtual Networking”, in High Performance Parallel and Distributed Computing (HPDC), 2016.
A. Matsunaga, A. Mast, and J. A. B. Fortes, “Workforce-efficient consensus in crowdsourced transcription of biocollections information”, Future Generation Computer Systems, vol. 56, p. 526-536, 2016.

2015

Liu, J. Qin, and R. Figueiredo, “The Dispatch Time Aligning I/O Scheduling for Parallel File Systems”, Cluster Computing, 2015.
Y. Jung, R. J. Figueiredo, and J. ‘A. B. Fortes, “Emergency Response using Ephemeral Social Communities across Online Social Networks”, EAI Endorsed Transactions on Collaborative Computing , vol. 15, no. 5, 2015.
K. Subratie, S. Aditya, R. J. Figueiredo, C. Carey, and P. Hanson, “GRAPLEr: A Lake Ecology Distributed Collaborative Environment Integrating Overlay Networks, High-throughput Computing and Web Services”, in PRAGMA Workshop on International Clouds for Data Science (PRAGMA-ICDS), 2015.
D. Ding, M. Conti, and R. J. Figueiredo, “Impact of Country-scale Internet Disconnection on Structured and Social P2P Overlays”, in IEEE International Symposium on a World of Wireless Mobile and Multimedia Networks (WoWMoM), 2015.
K. Razavi, et al., “Kangaroo: A Tenant-Centric Software-Defined Cloud Infrastructure”, IEEE International Conference on Cloud Engineering (IC2E). 2015.
H. Eom, R. J. Figueiredo, H. Cai, Y. Zhang, and G. Huang, “MALMOS: Machine Learning-based Mobile Offloading Scheduler”, in IEEE MobileCloud, 2015.
J. Deck, et al., “Meeting report: Identifying practical applications of ontologies for biodiversity informatics”, Standards in Genomic Sciences C7 – 25, vol. 10, p. 1-6, 2015.
R. J. Figueiredo, S. Aditya, K. Jeong, and K. Subratie, “Seamless Networking Among Edge Devices and Clouds with Fog Social Virtual Networks “, Sensor to Cloud Architectures Workshop (SCAW, with HPCA). 2015.
S. Soomro, A. Matsunaga, and J. A. B. Fortes, “Simplifying Extract-Transform-Load for Ranked Hierarchical Trees via Mapping Specifications”, in Formalisms for Reuse and Systems Integration, vol. 346, T. Bouabana-Tebibel and S. H. Rubin, Eds. 2015, p. 203-225.

2014

M. Tsugawa, A. Matsunaga, and J. A. B. Fortes, “Cloud Computing Security: What Changes with Software-Defined Networking”“, in Secure Cloud Computing, S. Jajodia, K. Kant, P. Samarati, A. Singhal, V. Swarup, and C. Wang, Eds. 2014, p. 77-93.
M. Tsugawa, A. Matsunaga, and J. A. B. Fortes, “Cloud Networking to Support Data Intensive Applications”, in Cloud Computing for Data-Intensive Applications, X. Li and J. Qiu, Eds. 2014, p. 61-81.
S. Kang, M. Tsugawa, A. Matsunaga, T. Hirofuchi, and J. A. B. Fortes, “Design and Implementation of Middleware for Cloud Disaster Recovery via Virtual Machine Migration Management”, in 2014 IEEE/ACM 7th International Conference on Utility and Cloud Computing (UCC), London, United Kingdom, 2014, p. 166-175.
Y. Jung, R. J. Figueiredo, and J. A. B. Fortes, “Location-based Timely Cooperation over Social Private Network “, in 10th IEEE International Conference on Collaborative Computing: Networking, Applications and Worksharing, 2014.
S. Soomro, A. Matsunaga, and J. A. B. Fortes, “Mapping Specifications for Ranked Hierarchical Trees in Data Integration Systems”, in 2014 IEEE International Conference on Information Reuse and Integration (IRI 2014), San Francisco, California, USA, 2014, p. 269-276.
A. Matsunaga, A. Mast, and J. A. B. Fortes, “Reaching Consensus in Crowdsourced Transcription of Biocollections Information”, in e-Science (e-Science), 2014 IEEE 10th International Conference on, Guarujá, Brazil, 2014, vol. 1, p. 57-64.
L. Walls, et al., “Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies”, PLoS ONE, vol. 9, p. e89606, 2014.
L. Walls, R. Guralnick, J. Deck, and A. Matsunaga, “A Specimen-based View of the World: Using the Biological Collections Ontology to Model Biodiversity Collections”, in 2014 ICBO Workshop: Starting an OBI-based Biobank Ontology, Houston, TX, USA, 2014, p. 64-66.
Y. Sheng, J. R. Davis, R. J. Figueiredo, V. Paramygin, P. Pardalos, and C. Vogiatzis, “Strengthening the resiliency of a coastal transportation system through integrated simulation of storm surge, inundation, and nonrecurrent congestion in Northeast Florida”, Journal of Marine Science and Engineering, vol. 2, no. 2, 2014.
P. St Juste, K. Jeong, H. Eom, C. Baker, and R. J. Figueiredo, “TinCan: User-Defined P2P Virtual Network Overlays for Ad-hoc Collaboration”, ICST Transactions on Collaborative Computing, vol. 14, no. 2, 2014.
X. Zhang, et al., “Towards Model-Defined Cloud of Clouds”, in Poster Session and ACM SRC of MODELS 2014, Valencia, Spain, 2014, p. 41-45.
K. Lee, et al., “Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models”, Journal of Computational Surgery, vol. 3, no. 12, 2014.

2013

A. Matsunaga, et al., “A Computational- and Storage-Cloud for Integration of Biodiversity Collections”, in 2013 IEEE 9th International Conference on e-Science, Beijing, China, 2013, p. 78-87.
Y. Jung and J. B. D. Joshi, “CPBAC: Property-based Access Control Model for Secure Cooperation in Online Social Networks”, Computer & Security, 2013.
J. Qin, Y. Liu, X. Mao, and J. McNair, “Deadline Based Resource Balancing Task Allocation for Clustered Heterogeneous LEO Small Satellite Network”, in Military Communications Conference, MILCOM 2013-2013 IEEE, 2013, p. 1825”1831.
Y. Liu, R. Figueiredo, Y. Xu, and M. Zhao, “On the design and implementation of a simulator for parallel file system research”, in the 29th IEEE conference on massive data storage, 2013.
P. Rattanatamrong and J. A. B. Fortes, “Dynamic Scheduling of Real-Time Mixture-of-Experts Systems on Limited Resources”, IEEE Transactions on Computers, 2013.
P. St Juste, H. Eom, R. J. Figueiredo, B. Woodruff, and C. Baker, “Enabling decentralized microblogging through P2PVPNs”, International Journal of Security and Networks, vol. 8, no. 3, 2013.
P. St Juste, H. Eom, K. Lee, and R. J. Figueiredo, “Enabling decentralized microblogging through P2PVPNs”, in Consumer Communications and Networking Conference (CCNC), 2013 IEEE, 2013, p. 323-328.
S. Kadirvel, J. Ho, and J. A. B. Fortes, “”Fault Management in Map-Reduce through Early Detection of Anomalous Nodes”, in 10th International Conference on Autonomic Computing (ICAC), 2013.
H. Eom, P. St Juste, R. J. Figueiredo, O. Tickoo, R. Illikkal, and R. Iyer, “Machine Learning-based Runtime Scheduler for Mobile Offloading Framework”, in 6th IEEE/ACM International Conference on Utility and Cloud Computing, Dresden, Germany, 2013.
S. Jia, P. St Juste, and R. J. Figueiredo, “A multidimensional heuristic for social routing in peer-to-peer networks”, in Consumer Communications and Networking Conference (CCNC), 2013 IEEE, 2013, p. 329-335.
H. Eom, P. St Juste, R. J. Figueiredo, O. Tickoo, R. Illikkal, and R. Iyer, “OpenCL-based Remote Offloading Framework for Trusted Mobile Cloud Computing”, in 19th IEEE International Conference on Parallel and Distributed Systems, Seoul, Korea, 2013.
S. Kang, M. Tsugawa, J. Fortes, and T. Hirofuchi, “Reducing the Migration Times of Multiple VMs on WANs Using a Feedback Controller”, in 2013 IEEE 27th International Parallel and Distributed Processing Symposium Workshops & PhD Forum (IPDPSW), Cambridge, MA, USA, 2013, p. 1480-1489.
X. Fu, T. Li, and J. Fortes, “Reliable Express Virtual Channel based Network-on-Chip under the Impact of Technology Scaling”, in International Symposium on Quality Electronic Design (ISQED), 2013.
S. Kadirvel and J. A. B. Fortes, “Towards Self-Caring MapReduce: A Study of Performance Penalties under Faults”, in Concurrency and Computation: Practice and Experience, 2013.
T. Hirofuchi, M. Tsugawa, H. Nakada, T. Kudoh, and S. Itoh, “A WAN-Optimized Live Storage Migration Mechanism toward Virtual Machine Evacuation upon Severe Disasters”, IEICE TRANSACTIONS on Information and Systems, vol. E96-D, no. 12, p. 2663-2674, 2013.

2012

S. Kadirvel and J. A. B. Fortes, “Autonomic Approach to Fault and Performance Management in Map-Reduce Clusters”, 43th Annual IEEE/IFIP International Conference on Dependable Systems and Networks (DSN 2012). 2012.
M. Zhao, et al., “CloudBay: Enabling an Online Resource Market Place for Open Clouds”, 5th IEEE/ACM International Conference on Utility and Cloud Computing (UCC 2012). 2012.
Y. Jung and J. B. D. Joshi, “CRiBAC: Community-based Role interaction based Access Control Model”, Computer & Security, vol. 31, no. 4, 2012.
J. Sanchez, et al., “Dynamically Repairing and Replacing Neural Networks: Using Hybrid Computational and Biological Tools”, IEEE Pulse, vol. 3, no. 1, p. 57 – 59, 2012.
D.I. Wolinsky, P. Chuchaisri, K. Lee, and R. J. Figueiredo, “Experiences with Self-Organizing Decentralized Grids Using the Grid Appliance”, International Journal of Cluster Computing, p. 1-19, 2012.
C. Jeffery and R. J. Figueiredo, “A Flexible Approach to Improving System Reliability with Virtual Lockstep”, IEEE Transactions on Dependable and Secure Computing, vol. 9, no. 1, p. 2-15, 2012.
S. Kadirvel and J. A. B. Fortes, “A Grey-box Approach to Performance Prediction in Map-Reduce based Platforms”, in International Conference on Computer Communication Networks (ICCCN – 2012), 2012.
P. Rattanatamrong and J. A. B. Fortes, “Improved Real-Time Scheduling of Periodic Tasks on Multiprocessors”, Concurrency and Computation: Practice and Experience, 2012.
K. Lee and R. J. Figueiredo, “MapReduce on Opportunistic Resources Leveraging Resource Availability”, in IEEE CloudCom, 2012.
K. Lee, T. W. Choi, P. O. Boykin, and R. J. Figueiredo, “MatchTree: Flexible, scalable, and fault-tolerant wide-area resource discovery with distributed matchmaking and aggregation”, Future Generation Computer Systems, 2012.
K. Lee, D. Wolinsky, and R. J. Figueiredo, “PonD: Dynamic Creation of HTC Pool on Demand Using a Decentralized Resource Discovery System”, 21st International ACM Symposium on High-Performance Parallel and Distributed Computing (HPDC 2012). p. 161–172, 2012.
S. Kang, M. Tsugawa, J. Fortes, and T. Hirofuchi, “Poster: Reducing the Migration Times of Multiple VMs on WANs”, High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion:. p. 1530-1530, 2012.
H. Eom, P. St Juste, R. J. Figueiredo, O. Tickoo, R. Illikkal, and R. Iyer, “SNARF: A Social Networking-inspired Accelerator Remoting Framework”, in 2012 ACM International Workshop on Mobile Cloud Computing (MCC 2012), Helsinki, Finland, 2012.
X. Mao, Y. Liu, and J. McNair, “A Solution for Co-Service of Real-time and Non-realtime Traffic in Cellular Cognitive Radio Networks”, in 2012 Military Communications Conference, Orlando, FL, 2012.
Y. Jung, M. Kim, A. Masoumzadeh, and J. B. D. Joshi, “A survey of security issue in multi-agent systems”, Artificial Intelligence Review, vol. 37, no. 3, 2012.
R. Zonfrillo, M. Kumar, J. A. B. Fortes, and F. K. Winston, “Telecenter for secure, remote, collaborative child fatality review”, Injury Prevention, 2012.
Y. Jung, M. Kim, and J. B. D. Joshi, “Towards Secure Cooperation in Online Social Networks”, in CollaboratCom 2012, 2012, p. 80-88.
M. Tsugawa, R. Figueiredo, J. Fortes, T. Hirofuchi, H. Nakada, and R. Takano, “On the use of virtualization technologies to support uninterrupted IT services: A case study with lessons learned from the Great East Japan Earthquake”, in Communications (ICC), 2012 IEEE International Conference on, 2012, p. 6324-6328.
J. Xu, D. Arteaga, M. Zhao, Y. Liu, R. J. Figueiredo, and Seetharami Seelam, “vPFS: Virtualization-based Bandwidth Management for Parallel Storage Systems”, in 28th IEEE Conference on Massive Data Storage (MSST”12), Pacific Grove, CA, 2012.
T. Hirofuchi, M. Tsugawa, H. Nakada, S. Itoh, and S. Sekiguchi, vol. 2012-OS-121, no. 11. 2012.

2011

A. Matsunaga, P. Riteau, M. Tsugawa, and J. A. B. Fortes, “Crosscloud Computing”, in High Performance Computing: From Grids and Clouds to Exascale, vol. 20, F. Ian, G. Wolfgang, G. Lucio, and J. R. Gerhard, Eds. 2011, p. 94-108.
Y. Jung, M. Kim, and J. B. D. Joshi, “DRiBAC: Context-Aware Dynamic Role Interaction Access Control”, in 12th IEEE International Conference of Information Reuse and Integration (IRI), 2011, p. 88 “ 93.
P. St Juste, D. Wolinsky, P. O. Boykin, and R. J. Figueiredo, “Litter: A Lightweight Peer-to-Peer Microblogging Service”, in Privacy, security, risk and trust (passat), 2011 ieee third international conference on and 2011 ieee third international conference on social computing (socialcom), 2011, p. 900 -903.
Y. Jung and M. Kim, “Ontology based Dynamic Role Interaction Access Control”, Journal of Research and Practice in Information Technology, vol. 43, no. 3, 2011.
K. Lee, T. W. Choi, A. Ganguly, D. Wolinsky, P. O. Boykin, and R. J. Figueiredo, “Parallel Processing Framework on a P2P System Using Map and Reduce Primitives”, 8th International Workshop on Hot Topics in Peer-to-Peer Systems (HotP2P 2011). p. 1602 -1609, 2011.
G. Venkatasubramanian, R. J. Figueiredo, and R. Illikkal, “On the Performance of Tagged Translation Lookaside Buffers: A Simulation-Driven Analysis”, in 19th International Symposium on Modeling, Analysis, and Simulation of Computer and Telecommunication Systems (MASCOTS), 2011.
M. Han, H. Chen, E. Boykin, and J. A. B. Fortes, “Reliability Evaluation of Logic Circuits Using Probablistic Gate Models”, Microelectronics Reliability, vol. 51, no. 2, p. 468-476, 2011.
M. Han, E. Boykin, H. Chen, J. Liang, and J. A. B. Fortes, “On the Reliability of Computational Structures using Majority Logic”, IEEE Transactions on Nanotechnology, 2011.
H. Eom, D. Wolinsky, and R. J. Figueiredo, “SOLARE: Self-Organizing Latency-Aware Resource Ensemble”, in 2011 13th IEEE International Conference on High Performance Computing and Communications (HPCC 2011), Banff, Canada, 2011.
P. Rattanatamrong, A. Matsunaga, A. J. Brockmeier, J. C. Sanchez, J. Principe, and J. A. B. Fortes, “Towards Closed-Loop Brain-Machine Experiments across Wide-Area Networks”, in Proceedings of the 5th International IEEE EMBS Conference on Neural Engineering, Cancun, Mexico, 2011, p. 453-456.
S. Kadirvel and J. A. B. Fortes, “Towards Self-Caring MapReduce: Proactive Fault Handling for Reducing Execution-Time Penalties”, in International Conference on High Performance Computing & Simulation (HPCS 2011), 2011.
Y. Liu, R. J. Figueiredo, D. Clavijo, Y. Xu, and M. Zhao, “Towards Simulation of Parallel File System Scheduling Algorithms with PFSsim”, in 7th IEEE International Workshop on Storage Network Architecture and Parallel I/O, Denver, CO, 2011.

2010

D. I. Wolinsky, P. St Juste, P. O. Boykin, and R. J. Figueiredo, “Addressing the P2P Bootstrap Problem for Small Overlay Networks”, in Peer-to-Peer Computing (P2P), 2010 IEEE Tenth International Conference on, 2010, p. 1 -10.
J. Davis, et al., “Application of emerging cyberinfrastructure technologies to aid in the education and training of coastal and estuarine scientists”, Journal of Ocean Technology, vol. 5, no. 1, p. 56-80, 2010.
A. Matsunaga, “’Automatic enablement, coordination and resource usage prediction of unmodified applications on clouds”, 2010.
P. Rattanatamrong, A. Matsunaga, and J. A. B. Fortes, “BMI CyberWorkstation: A cyberinfrastructure for collaborative experimental research on Brain-Machine Interfaces”, in Proceedings of the 6th International Conference on Collaborative Computing: Networking, Applications and Worksharing (CollaborateCom), Chicago, Illinois, 2010, p. 1-10.
Y. Jung, “Community Computing: Multiagent based Computing Paradigm for Cooperative Pervasive System”, in Advanced Design Approaches to Emerging Software Systems: Principles, Methodology, and Tools, 2010, p. 195-217.
D.I. Wolinsky, K. Lee, P. O. Boykin, and R. J. Figueiredo, “On the Design of Autonomic, Decentralized VPNs”, 6th International Conference on Collaborative Computing (CollaborateCom 2010). p. 1 -10, 2010.
J. Xu and R. J. Figueiredo, “GatorShare: a file system framework for high-throughput data management”, in The Third International Workshop on Data Intensive Distributed Computing, 2010.
P. Rattanatamrong, et al., “Model development, testing and experimentation in a CyberWorkstation for Brain-Machine Interface research”, in 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010), Buenos Aires, 2010, p. 4339 – 4342.
D.I. Wolinsky, P. St Juste, P. O. Boykin, and R. J. Figueiredo, “OverSoc: Social Profile Based Overlays”, in Enabling Technologies: Infrastructures for Collaborative Enterprises (WETICE), 2010 19th IEEE International Workshop on, 2010, p. 205 -210.
A. Matsunaga, M. Tsugawa, and J. Fortes, “Scaling-out CloudBLAST: Combining Technologies to BLAST on the Sky”, in The Third IEEE International Scalable Computing Challenge (SCALE 2010), Melbourne, Australia, 2010.
S. Kadirvel and J. A. B. Fortes, “Self-Caring IT Systems – A Proof-of-Concept Implementation in Virtualized Environments”, in IEEE International Conference on Cloud Computing and Science (CloudCom – 2010), 2010.
G. Venkatasubramanian, R. J. Figueiredo, R. Illikkal, and D. Newell, “A Simulation Framework for the Analysis of TLB behavior in Virtualized Environments”, in 18th IEEE International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunication Systems (MASCOTS), 2010.
Y. Jung and M. Kim, “Situation-Aware Community Computing Model for Developing Dynamic Ubiquitous Computing Systems”, Journal of Universal Computer Science, vol. 16, no. 15, 2010.
P. Riteau, M. Tsugawa, A. Matsunaga, J. A. B. Fortes, and K. Keahey, “Sky Computing on FutureGrid and Grid”5000 (poster)”, in TeraGrid’10, Pittsburgh, PA, 2010.
P. St Juste, D. Wolinsky, K. Lee, P. O. Boykin, and R. J. Figueiredo, “SocialDNS: A decentralized naming service for collaborative P2P VPNs”, in Collaborative Computing: Networking, Applications and Worksharing (CollaborateCom), 2010 6th International Conference on, 2010, p. 1 -10.
P. St Juste, D. Wolinsky, P. Oscar Boykin, M. J. Covington, and R. J. Figueiredo, “SocialVPN: Enabling wide-area collaboration with integrated social and overlay networks”, Computer Networks, vol. 54, p. 1926”1938, 2010.
A. Ganguly, P. O. Boykin, and R. J. Figueiredo, “Techniques for Low-latency Proxy Selection in Wide-area P2P Networks”, in Proceedings of Seventh International Workshop on Hot Topics in Peer-to-Peer Systems (HotP2P), 2010.
S. Kadirvel and J. A. B. Fortes, “Towards IT Systems that are Capable of Managing their Health”, in 16th Monterey Workshop – Modelling, Development and Verification of Adaptive Computer Systems, 2010.
Y. Liu, R. J. Figueiredo, D. Clavijo, Y. Xu, and M. Zhao, “Towards Simulation of Parallel File System Scheduling Algorithms with PFSsim”, in 5th Petascale Data Storage Workshop, Supercomputing”10, New Orleans, LA, 2010.
A. Matsunaga and J. A. B. Fortes, “On the use of machine learning to predict the time and resources consumed by applications”, in Proceedings of the 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing, 2010, p. 495-504.
M. Tsugawa, P. Riteau, A. Matsunaga, and J. A. B. Fortes, “User-Level Virtual Networking Mechanisms to Support Virtual Machine Migration Over Multiple Clouds”, in IEEE International Workshop on Management of Emerging Networks and Services, Miami, Florida, 2010, p. 588-592.
J. Xu, L. Wang, D. Clavijo, Y. Liu, R. J. Figueiredo, and M. Zhao, “Virtualization-based Bandwidth Management for Parallel Storage Systems”, in 5th Petascale Data Storage Workshop, Supercomputing”10, New Orleans, LA, 2010.

2009

S. B. Sinnott, A. Matsunaga, E. W. Bucholz, and J. A. B. Fortes, “Atomic-Scale Friction Research Education and Synergy Hub”, in Proceedings of 2009 NSF Engineering Research and Innovation Conference, Honolulu, Hawaii, 2009.
M. Tsugawa and J. A. B. Fortes, “Characterizing user-level network virtualization: performance, overheads and limits”, International Journal of Network Management, p. n/a – n/a, 2009.
J. DiGiovanna, B. Mahmoudi, J. A. B. Fortes, J. Principe, and J. Sanchez, “Co-adaptive Brain-Machine Interface via Reinforcement Learning”, IEEE Transactions on Biomedical Engineering, vol. 56, no. 1, p. 54-64, 2009.
J. Xu and J. A. B. Fortes, “Cooperative Autonomic Management in Dynamic Distributed Systems”, in The 11th International Symposium on Stabilization, Safety, and Security of Distributed Systems (SSS 2009), Lyon, France, 2009.
J. DiGiovanna, J. A. B. Fortes, M. Zhao, B. Mahmoudi, L. Hermer, and R. J. Figueiredo, “Cyber-Workstation for Computational Neuroscience”, Frontiers in neuroengineering, 2009.
D. I. Wolinsky, et al., “On the design and implementation of structured P2P VPNs”, TR-ACIS-09-003, vol. abs/1001.2575, 2009.
D. I. Wolinsky, Y. Liu, P. St Juste, G. Venkatasubramanian, and R. J. Figueiredo, “On the design of scalable, self-configuring virtual networks”, in IEEE/ACM Supercomputing 2009, 2009.
D. I. Wolinsky, Y. Liu, P. St Juste, G. Venkatasubramanian, and R. J. Figueiredo, “On the design of scalable, self-configuring virtual networks”, in Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, 2009, p. 13.
M. Tsugawa, “On the design, performance, and management of virtual networks for grid computing”, 2009.
A. Ganguly, D. Wolinsky, P. O. Boykin, and R. J. Figueiredo, “Improving Peer Connectivity in Wide-area Overlays of Virtual Workstations”, Cluster Computing, vol. 12, no. 2, p. 239-256, 2009.
M. Kumar, R. Newman, J. A. B. Fortes, D. Durbin, and F. Winston, “An IT Appliance for Remote Collaborative Review of Mechanisms of Injury to Children in Motor Vehicle Crashes”, In Proc. 5th International Conf. on Collaborative Computing: Networking, Applications and Worksharing. 2009.
G. Venkatasubramanian, R. Illikkal, D. Newell, and R. J. Figueiredo, “A Simulation Analysis of Shared TLBs with Tag-based Partitioning in Multicore Virtualized Environments”, in Proceedings of the 2nd International Workshop on Managed Multi-Core Systems, 2009.
K. Keahey, M. Tsugawa, A. Matsunaga, and J. A. B. Fortes, “Sky Computing”, IEEE Internet Computing, vol. 13, p. 43-51, 2009.
X. Fu, T. Li, and J. A. B. Fortes, “Soft Error Vulnerability Aware Process Variation Mitigation”, The 15th International Symposium on High-Performance Computer Architecture. 2009.
G. Venkatasubramanian, R. Illikkal, D. Newell, and R. J. Figueiredo, “TMT – A TLB Tag Management Framework for Virtualized Platforms”, in Proceedings of SBAC-PAD 21st International Symposium on Computer Architecture and High Performance Computing, 2009.
D. I. Wolinsky, Y. Liu, and R. J. Figueiredo, “Towards a uniform self-configuring virtual private network for workstations and clusters in grid computing”, the 3rd international workshop on Virtualization technologies in distributed computing. 2009.
M. Tsugawa, A. Matsunaga, and J. Fortes, “User-Level Virtual Network Support for Sky Computing”, in 2009 5th IEEE International Conference on e-Science (e-Science)2009 Fifth IEEE International Conference on e-Science, Oxford, United Kingdom, 2009, p. 72 – 79.

2008

R. J. Figueiredo, et al., “Archer: A Community Distributed Computing Infrastructure for Computer Architecture Research and Education”, The 4th International Conference on Collaborative Computing (CollaborateCom 2008). 2008.
J. Xu, M. Zhao, J. A. B. Fortes, R. Carpenter, and M. Yousif, “Autonomic Resource Management in Virtualized Data Centers”, Cluster Computing: the Journal of Networks, Software Tools and Applications, vol. 11, no. 3, p. 213-227, 2008.
R. J. Figueiredo, J. Sanchez, J. Príncipe, J. A. B. Fortes, and M. Zhao, “BMI Cyberworkstation: Enabling Dynamic Data-Driven Brain-Machine Interface Research Through Cyberinfrastructure”, in 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Vancouver, British Columbia, Canada, 2008.
M. Tsugawa and J. A. B. Fortes, “Characterizing User-level Network Virtualization: Performance, Overheads, and Limits”, 4th IEEE International Conference on e-Science. 2008.
A. Matsunaga, M. Tsugawa, and J. Fortes, “CloudBLAST: Combining MapReduce and Virtualization on Distributed Resources for Bioinformatics Applications”, in 2008 IEEE Fourth International Conference on eScience (eScience), Indianapolis, IN, USA, 2008, p. 222-229.
B. Mahmoudi, J. A. B. Fortes, J. Príncipe, J. Sanchez, and J. DiGiovanna, “Co-Adaptive Brain Machine Interfaces via Reinforcement Learning”, in Neural Interfaces Conference, Cleveland, Ohio, 2008.
M. Tsugawa, A. Matsunaga, J. A. B. Fortes, and A. Macintosh, “Collaborative Cyberinfrastructure for Transnational Digital Government”, in Digital Government, vol. 17, H. Chen, et al., Eds. 2008, p. 283-305.
X. Fu, T. Li, and J. A. B. Fortes, “Combined Circuit and Microarchitecture Techniques for Effective Soft Error Robustness in SMT Processors”, in International Conference on Dependable Systems and Networks (DSN), 2008.
Y. Jung, “Community Computing Model”, in U-Service Convergence Community Computing, 2008.
S. Kadirvel, et al., “Enabling high performance computing for the UF genetics research community through a web-based BLAST portal (poster)”. 2008.
R. J. Figueiredo, P. O. Boykin, P. St Juste, and D. Wolinsky, “Facilitating the deployment of ad-hoc virtual organizations with integrated social and overlay networks”, in Proceedings of the 17th international symposium on High performance distributed computing, 2008, p. 201”204.
A. Matsunaga, M. Tsugawa, and J. A. B. Fortes, “Getting on the Virtual Bus: By way of some common virtualization tools, agencies can make SOA their next stop for legacy apps”, FEDTECH, vol. 5, p. 31-32, 2008.
A. Ganguly, D. Wolinsky, P. O. Boykin, and R. J. Figueiredo, “Improving Peer Connectivity in Wide-area Overlays of Virtual Workstations”, in Proceedings of the Symposium on High-Performance Distributed Computing (HPDC), 2008.
R. J. Figueiredo, P. O. Boykin, P. St Juste, and D. Wolinsky, “Integrating Overlay and Social Networks for Seamless P2P Networking”, in Workshop on Enabling Technologies: Infrastructure for Collaborative Enterprises, 2008. WETICE ’08. IEEE 17th, 2008, p. 93 -98.
X. Fu, T. Li, and J. A. B. Fortes, “NBTI Tolerant Microarchitecture Design in the Presence of Process Variation”, in 41st International Symposium on Microarchitecture (Micro-41 2008), 2008.
X. Fu, W. Zhang, T. Li, and J. A. B. Fortes, “Optimizing Instruction Queue Reliability to Soft Error on Simultaneous Multithreaded Architectures”, in International Conference on Parallel Processing (ICPP), 2008.
X. Fu, T. Li, and J. A. B. Fortes, “ORBIT: Effective Instruction Queue Soft-error Vulnerability Mitigation on Simultaneous Multithreaded Architectures using Operand Readiness-based Instruction Dispatch”, in International Symposium on Computer Architecture and High Performance Computing (SBAC-PAD), 2008.
C. Jeffery and R. J. Figueiredo, “Reducing Fault Detection Latencies in Virtually-lockstepped Systems”, in Proceedings of the 3rd Workshop on Dependable Architectures, 2008.
Y. Jung, A. Masoumzadeh, J. B. D. Joshi, and M. Kim, “RiBAC: Role Interaction Based Access Control Model for Community Computing”, in CollaborateCom 2008, 2008, vol. 10, p. 304-321.
K. Keahey, R. Figueiredo, J. A. B. Fortes, T. Freeman, and M. Tsugawa, “Science Clouds: Early Experiences in Cloud Computing for Scientific Applications”, in Cloud Computing and Its applications, 2008.
J. Sanchez, J. Principe, T. Nishida, R. Bashirullah, J. Harris, and J. A. B. Fortes, “Technology and Signal Processing for Brian-Machine Interfaces”, Signal Processing Magazine, vol. 25, no. 1, p. 29-40, 2008.
V. Ravinuthula, V. Garg, J. Harris, and J. A. B. Fortes, “Time-Mode Circuits for Analog Computation”, International Journal of Circuit Theory and Applications, vol. 37, no. 5, p. 631-659, 2008.
P. St Juste, D. Wolinsky, J. Xu, M. Covington, and R. J. Figueiredo, “On the Use of Social Networking Groups for Automatic Configuration of Virtual Grid Environments”, in Grid Computing Environments Workshop, 2008. GCE ’08, 2008, p. 1 -10.

2007

J. Zhang, X. Fu, T. Li, and J. A. B. Fortes, “An Analysis of Microarchitecture Vulnerability to Soft Errors on Simultaneous Multithreaded Architectures”, in International Symposium on Performance Analysis of Systems and Software (ISPASS), 2007.
J. Zhang, R. J. Figueiredo, M. Yousif, and R. Carpenter, “Application Resource Demand Phase Analysis and Prediction in Support of Dynamic Resource Provisioning”, 4th IEEE International Conference on Autonomic Computing (ICAC). 2007.
R. J. Figueiredo, V. Backman, Y. Liu, and J. Paladugula, “Architecture and Performance of a Grid-enabled Lookup-based Biomedical Optimization Application: Light Scattering Spectroscopy”, IEEE Transactions on Information Technology in Biomedicine, vol. 11, no. 2, p. 170-178, 2007.
Y. Jung, J. Lee, and M. Kim, “Community Computing Model supporting Community Situation based Cooperation and Conflict Resolution”, in 5th Software Technologies for Embedded and Ubiquitous Systems (SEUS 2007), 2007, p. 47-56.
Y. Jung, J. Lee, and M. Kim, “Community Situation based Strict Cooperation Model for Cooperative Ubiquitous Systems”, Journal of Convergence Information Technology, vol. 2, no. 1, p. 93-97 , 2007.
A. Ganguly, D. Wolinsky, P. O. Boykin, and R. J. Figueiredo, “Decentralized Dynamic Host Configuration in Wide-Area Overlay Networks of Virtual Workstations”, in Workshop on Large-Scale and Volatile Desktop Grids (PCGrid @ IPDPS), 2007.
G. Venkatasubramanian, P. O. Boykin, and R. J. Figueiredo, “Design of High-Yield Defect-Tolerant Self-Assembled Nanoscale Memories”, in IEEE/ACM International Symp. on Nanoscale Architectures (NANOARCH), 2007.
E.R. Taylor and J. A. B. Fortes, “Device Variability Impact on Logic Gate Failure Rates”, in Government Microcircuit Application and Critical Technology Conference (GOMACTech-07), 2007.
M. Zhao and R. J. Figueiredo, “Experimental Study of Virtual Machine Migration in Support of Reservation of Cluster Resources”, in 2nd International Workshop on Virtualization Technologies in Distributed Computing (VTDC), 2007.
A. Matsunaga, M. Tsugawa, and J. A. B. Fortes, “Integration of text-based applications into service-oriented architectures for transnational digital government”, in Proceedings of the 8th annual international conference on Digital government research: bridging disciplines & domains, Philadelphia, Pennsylvania, 2007, p. 112-121.
V. Chadha, R. Illikkal, R. Iyer, J. Moses, D. Newell, and R. J. Figueiredo, “I/O Processing in a Virtualized Platform: A Simulation-Driven Approach”, Proc. ACM Virtual Execution Environments Conference (VEE). 2007.
J. Zhang and R. J. Figueiredo, “Learning-aided predictor integration for system performance prediction”, Cluster Computing, vol. 10, p. 425”442, 2007.
M. Kim, Y. Jung, J. Lee, and M. Kim, “Policy based conflict resolution in community computing”, Patent No. 10-2007-0006234. 2007.
V. Chadha and R. J. Figueiredo, “ROW-FS: A User-level Virtualized Redirect-on-write Distributed File System for Wide Area Applications”, in HiPC – International Conference on High Performance Computing, 2007.
C. Jeffery and R. J. Figueiredo, “Towards Byzantine Fault Tolerance in Many-core Computing Platforms”, in IEEE Pacific Rim Dependable Computing Conference (PRDC), 2007.
J. DiGiovanna, et al., “Towards Real-Time Distributed Signal Modeling for Brain Machine Interfaces”, in International Conference on Computational Science (ICCS 2007) – DDDAS Workshop, 2007.
J. Xu, M. Zhao, R. Carpenter, and J. A. B. Fortes, “On the Use of Fuzzy Modeling in Virtualized Data Center Management”, in International Conference on Autonomic Computing (ICAC), 2007.
M. Zhao and R. J. Figueiredo, “A User-level Secure Grid File System”, in IEEE/ACM Supercomputing, 2007.
A. Ganguly, A. Agrawal, P. O. Boykin, and R. J. Figueiredo, “WOW: Self-organizing Wide-area Overlay Networks of Virtual Workstations”, Journal of Grid Computing, vol. 5, no. 2, p. 151-172, 2007.

2006

X. Fu, J. Poe, T. Li, and J. A. B. Fortes, “Characterizing Microarchitecture Soft Error Vulnerability Phase Behavior”, in International Symposium on Modeling, Analysis, and Simulation of Computer and Telecommunication Systems, 2006.
Y. Jung, J. Lee, and M. Kim, “Community based Ubiquitous System Development in Multi-agent Environment”, in 4th International Workshop on Ubiquitous Mobile Information and Collaboration Systems (UMICS”06), 2006, p. 984-998.
M. Kim, Y. Jung, J. Lee, and M. Kim, “Context-Based Cooperation Architecture for Ubiquitous Environment”, in Third International Symposium of Ubiquitous Computing Systems (UCS 2006), 2006, p. 171-182.
D. I. Wolinsky, et al., “On the Design of Virtual Machine Sandboxes for Distributed Computing in Wide Area Overlays of Virtual Workstations”, in Proc. First Workshop on Virtualization Technologies in Distributed Computing (VTDC), with Supercomputing, 2006.
Y. Jung, J. Lee, and M. Kim, “A Development Approach for Ubiquitous System using Community Metaphor”, in Third International Symposium of Ubiquitous Computing Systems (UCS 2006), 2006, p. 129-138.
M. Zhao, J. Zhang, and R. J. Figueiredo, “Distributed File System Virtualization Techniques Supporting On-Demand Virtual Machine Environments for Grid Computing”, Cluster Computing, vol. 9, no. 1, p. 45-56, 2006.
C. Jeffery and R. J. Figueiredo, “Hierarchical Fault-tolerance for Nanoscale Memories”, IEEE Transactions of Nanotechnology, vol. 5, no. 4, p. 407-414, 2006.
E.R. Taylor, J. Han, and J. A.B. Fortes, “An Investigation into the Maximum Tolerable Error Rate of Majority Gates for Reliable Computation”, in 33rd Annual International Symposium on Computer Architecture – IEEE International Workshop on Design and Test of Defect-Tolerant Nanoscale Architectures, 2006.
A. Ganguly, A. Agrawal, P. O. Boykin, and R. J. Figueiredo, “IP over P2P: Enabling Self-configuring Virtual IP Networks for Grid Computing”, in Proc. 20th IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2006.
Y. Jung, J. Lee, and M. Kim, “Method for developing community computing system”, Patent No. 10-2006-0111970. 2006.
Y. Jung, J. Lee, and M. Kim, “Multi-agent based Community Computing System Development with the Model Driven Architecture”, in Fifth International Joint conference on Autonomous Agents and Multiagent Systems (AAMAS”06), 2006, p. 1329-1331.
G. Venkatasubramanian and R. J. Figueiredo, “A Nanoscale Memory Interface Scheme Based on Hierarchical Memory Mapping”, in IEEE Nano, 2006.
J. A. B. Fortes, R. Figueiredo, L. Hermer-Vazquez, J. Principe, and J. Sanchez, “A New Architecture for Deriving Dynamic Brain-Machine Interfaces”, in International Conference on Computational Science (ICCS 2006 – DDDAS Workshop), 2006.
J. A. B. Fortes, “Probabilistic Computation”, in 2006 IEEE Conference on Nanotechnology (IEEE-NANO 2006), 2006.
A. Matsunaga, M. Tsugawa, S. Adabala, R. J. Figueiredo, H. Lam, and J. A. B. Fortes, “Science Gateways Made Easy: The In-VIGO Approach”, Concurrency and Computation: Practice and Experience, vol. 19, p. 905-919, 2006.
X. Fu, T. Li, and J. A. B. Fortes, “Sim-SODA: A Unified Framework for Architectural Level Software Reliability Analysis”, in 33rd Annual International Symposium on Computer Architecture – Benchmarking and Simulation: Workshop on Modeling, 2006.
M. Zhao, J. Xu, and R. J. Figueiredo, “Towards Autonomic Grid Data Management with Virtualized Distributed File Systems”, in Proc. International Conference on Autonomic Computing (ICAC), 2006.
E. R. Taylor, J. Han, and J. A. B. Fortes, “Towards the Accurate and Efficient Reliability Modeling of Nanoelectronic Circuits”, in 2006 IEEE Conference on Nanotechnology (IEEE-NANO 2006), 2006.
M. Tsugawa and J. A. B. Fortes, “A Virtual Network (ViNe) Architecture for Grid Computing”, in 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006.
M. Tsugawa, A. Matsunaga, and J. A. B. Fortes, “Virtualization technologies in transnational DG (poster)”, in Proceedings of the 2006 international conference on Digital government research, San Diego, California, 2006, p. 456-457.
A. Ganguly, A. Agrawal, P. O. Boykin, and R. J. Figueiredo, “WOW: Self-organizing Wide-area Overlay Networks of Virtual Workstations”, in Proc. High Performance Distributed Computing (HPDC), 2006.

2005

J. Zhu, A. Matsunaga, V. Sanjeepan, H. Lam, and J. A. B. Fortes, “Application Modeling and Representation for Automatic Grid-Enabling of Legacy Applications”, in 1st IEEE International Conference on e-Science and Grid Computing, 2005, p. 24-31.
B. Gao, Y. Qi, and J. ‘A. B. Fortes, “Bifurcations and fundamental error bounds for fault-tolerant computations”, IEEE Transactions on Nanotechnology, vol. 4, no. 4, p. 395-402, 2005.
J. Han, E. Taylor, J. Gao, and J. A. B. Fortes, “Faults, Error Bounds and Reliability of Nanoelectronic Circuits”, in IEEE 16th International Conference on Application-Specific Systems, Architectures and Processors (IEEE-ASAP 2005), 2005.
Y. Jung and E. Hwang, “A Flexible Privilege Management Scheme for Role Graph Model”, Lecture Notes in Computer Science, vol. 3732, p. 546-555, 2005.
A. Adabala, et al., “From virtualized resources to virtual computing grids: the In-VIGO system”, Future Gener. Comput. Syst., vol. 21, p. 896-909, 2005.
M. Tsugawa, et al., “In-VIGO virtual networks and virtual application services: automated grid-enabling and deployment of applications (poster)”, in Proceedings of the 2005 14th IEEE International Symposium on High Performance Distributed Computing, 2005, p. 312-313.
Y. Qi, J. Gao, and J. A. B. Fortes, “Markov Chains and Probabilistic Computation: A General Framework for Multiplexed Nanoelectronic System”, vol. 4, 2005.
K. Shah, P. Chiu, M. Jain, J. ‘A. B. Fortes, B. Moudgil, and S. Sinnott, “Morphology and Mechanical Properties of Surfactant Aggregates at Water”Silica Interfaces:” Molecular Dynamics Simulations”, Langmuir, vol. 21, no. 12, p. 5337”5342, 2005.
V. Ravinuthula, J. Harris, and J. A. B. Fortes, “Reliability Improvement in Time-mode Nanocomputation”, in First International Conference on Bio-Nano-Informatics (BNI) Fusion, 2005.
J. Han, E. Taylor, J. Gao, and J. A. B. Fortes, “Reliability Modeling of Majority-Logic Based Nanoelectronic Circuits”, in 5th IEEE Conference on Nanotechnology (IEEE-NANO 2005), 2005.
R. J. Figueiredo, P. A. Dinda, and J. ‘A. B. Fortes, “Resource Virtualization Renaissance”, IEEE Comlputer, vol. 38, no. 5, p. 28-31, 2005.
A. Matsunaga, M. Tsugawa, S. Adabala, R. J. Figueiredo, H. Lam, and J. ‘A. B. Fortes, “Science Gateways Made Easy: the In-VIGO Approach”, in 14th Global Grid Forum (GGF14) – Workshop on Science Gateways, 2005.
V. Sanjeepan, A. Matsunaga, L. Zhu, H. Lam, and J. A. B. Fortes, “A Service-Oriented, Scalable Approach to Grid-Enabling of Legacy Scientific Applications”, in 3rd IEEE International Conference on Web Services, 2005, p. 553-560.
M. Zhao, V. Chadha, and R. J. Figueiredo, “Supporting Application-Tailored Grid File System Sessions with WSRF-Based Services”, in High Performance Distributed Computing (HPDC), 2005.
J. Han, J. Gao, Y. Qi, P. Jonker, and J. ‘A. B. Fortes, “Toward hardware-redundant, fault-tolerant logic for nanoelectronics”, IEEE Design & Test of Computers, vol. 22, no. 4, p. 328-339, 2005.
J. Xu, S. Adabala, and J. ‘A. B. Fortes, “Towards Autonomic Virtual Applications in the In-VIGO System”, in 2nd IEEE International Conference on Autonomic Computing (ICAC-05), 2005.
J. A. B. Fortes, “Transnational Digital Government Research”, in 6th Annual National Conference on Digital Government Research, 2005.
S. Su, et al., “Transnational information sharing, event notification, rule enforcement and process coordination”, International Journal of Electronic Government Research (IJEGR), vol. 1, p. 1-26, 2005.
A. Matsunaga, et al., “On the Use of Virtualization and Service Technologies to Enable Grid-Computing”, in Euro-Par 2005 Parallel Processing: 11th International Euro-Par Conference, 2005, vol. 3648.
J. A. B. Fortes, V. Ravinuthula, J. Harris, and R. J. Figueiredo, “Using Time and Redundancy for Nanocomputation”, in Government Microcircuit Application and Critical Technology Conference (GOMACTech-05), 2005.
J. A. B. Fortes, R. J. Figueiredo, and M. S. Lundstrom, “Virtual Computing Infrastructures for Nanoelectronics Simulation”, Proceedings of the IEEE, vol. 93, p. 1839-1847, 2005.
A. Matsunaga, M. Tsugawa, and J. A. B. Fortes, “Virtual machines in transnational digital government: a case study”, in Proceedings of the 2005 national conference on Digital government research (poster), Atlanta, Georgia, 2005, p. 255-256.
Li, T. Li, T. Kahveci, and J. A. B. Fortes, “Workload Characterization of Bioinformatics Applications on Pentium 4 Architecture,”, in International Symposium on Modeling, Analysis, and Simulation of Computer and Telecommunication Systems (MASCOTS), 2005.

2004

W. Hassanein, J. ‘A. B. Fortes, and R. Eigenmann, “Data Forwarding through In- Memory Precomputation Threads”, in International Conference on Supercomputing (ICS), 2004.
B. Davis, J. Principe, and J. ‘A. B. Fortes, “Design and Performance Analysis of Nanoscale Content-Addressable Memories”, in 4th IEEE Conference on Nanotechnology, 2004.
M. Zhao, J. Zhang, and R. J. Figueiredo, “Distributed File System Support for Virtual Machines in Grid Computing”, in Proceedings of High Performance Distributed Computing (HPDC), 2004.
C. Jeffery, A. Basagalar, and R. J. Figueiredo, “Dynamic Sparing and Error Correction Techniques for Fault Tolerance in Nanoscale Memory Structures”, Proc. IEEE International Conference on Nanotechnology (NANO). 2004.
Y. Jung and E. Hwang, “Implementing an Information Service System for Physical Object Distribution in Ubiquitous Network”, in 14th international conference on Artificial Reality and Telexistence (ICAT), 2004, p. 191-198.
S. Su, et al., “A Prototype System for Transnational Information Sharing and Process Coordination: System Demo”, in 5th Annual National Conference on Digital Government Research, Seattle, WA, 2004, p. 287-288.
R. J. Figueiredo, N. Kapadia, and J. A. B. Fortes, “Seamless Access to Decentralized Storage Services in Computational Grids via a Virtual File System”, Cluster Computing, vol. 7, no. 2, p. 113-122, 2004.
S. Adabala, A. Matsunaga, M. Tsugawa, R. Figueiredo, and J. A. B. Fortes, “Single sign-on in In-VIGO: role-based access via delegation mechanisms using short-lived user identities”, in 18th International Parallel and Distributed Processing Symposium (IPDPS’04), Santa Fe, New Mexico, 2004, p. 22.
J. Paladugula, M. Zhao, and R. J. Figueiredo, “Support for Data-Intensive, Variable-Granularity Grid Applications via Distributed File System Virtualization – A Case Study of Light Scattering Spectroscopy”, in Challenges of Large-scale Applications in Distributed Environments (CLADE) Workshop, 2004.
J. A. B. Fortes, “Transnational Digital Government Research”, in 5th annual National Conference on Digital Government Research, 2004.
I. Krsul, A. Ganguly, J. Zhang, J. ‘A. B. Fortes, and R. J. Figueiredo, “VMPlants: Providing and Managing Virtual Machine Execution Environments for Grid Computing”, in Supercomputing 2004 High Performance Computing, Networking, and Storage Conference (SC2004), 2004.

2003

R. J. Figueiredo, P. A. Dinda, and J. A. B. Fortes, “A Case for Grid Computing on Virtual Machines”, in 23rd International Conference on Distributed Computing Systems (ICDCS 2003), 2003, p. 550-559.
Y. Jung and E. Hwang, “Dynamic Privileges Insertion using refinement of Privilege in Role Graph Model”, in Conference of Korea Information Science Society , 2003, vol. 30, no. 1, p. 637-639.
Cavalli-Sforza, et al., “Enabling Transnational Collection, Notification, and Sharing of Information”, in National Conference on Digital Government (dg. 2003), 2003.
J. A. B. Fortes, “Future Challenges in VLSI System Design”, in IEEE Computer Society Annual Symposium on VLSI, 2003.
J. Lee and J. A. B. Fortes, “Generation of Injective and Reversible Modular Mappings”, Transactions on Parallel and Distributed Computing, vol. 14, 2003.
Butt, S. Adabala, N. Kapadia, R. J. Figueiredo, and J. A. B. Fortes, “Grid Computing Portals and Security Issues”, Journal of Parallel and Distributed Computing, vol. 63, no. 10, p. 1006-1014, 2003.
J. A. B. Fortes, M. Davis, J. Harris, and R. Figueiredo, “Nanoelectronic Adaptive Systems”, in Government Microcircuit Applications and Critical Technology Conference (GOMACtech), 2003.
S. Datta, et al., “NASA University Research Education and Technology: Institute for Nanoelectronics and Computing”, in NASA University Research Education and Technology: Institute for Nanoelectronics and Computing, 2003.
R. Subramanyan, J. Miguel-Alonso, and J. A. B. Fortes, “A Reconfigurable Monitoring System for Large-Scale Network Computing”, in 9th International Euro-Par Conference, 2003.
Y. Jung, W. Kim, and E. Hwang, “Sports Image Classifier based on Bayesian Classification”, in 10th Conference of the Spanish Association for Artificial Intelligence (CAEPIA 2003), 2003, p. 15-24.

2002

A. R. Butt, S. Adabala, N. Kapadia, R. Figueiredo, and J. A. B. Fortes, “Fine-Grain Access Control for Securing Shared Resources in Computational Grids”, International Parallel and Distributed Processing Symposium, 8 pages, April 15-19, 2002. (Proceedings in CD format). 2002.
S. Adabala and J. A. B. Fortes, “An Online Heuristic for Data Placement in Computer Systems with Active Disks”, in International Conference on Parallel Processing, Vancouver, Canada, August 2002, 2002.
J. A. B. Fortes and M. Davis, “Space-Time Delay Architectures for Molecular Electronics”, in 2nd IEEE Conference on Nanotechnology (IEEE NANO 2002), 2002.
W. Hassanein, J. A. B. Fortes, and R. Eigenmann, “Towards Guided Data Forwarding Using Intelligent Memory”, in 2nd Annual Workshop on Memory Performance Issues (WMPI 2002), 2002.

2001

D. Royo, N. H. Kapadia, J. A. B. Fortes, and L. D. de Cerio, “Active Yellow Pages: A Pipelined Resource Management Architecture for Wide-Area Network Computing”, in 10th IEEE International Symposium on High Performance Distributed Computing (HPDC-10), San Francisco, California, August 7”9, 2001, 2001.
J. P. Bradford and J. A. B. Fortes, “Characterization and Parallelization of Decision-tree Induction”, Journal of Parallel and Distributed Computing, vol. 61, p. 322-349, 2001.
Y. Jung and E. Hwang, “Design of Query Reformulation System for Efficient Retrieval of XML Documents”, in Conference of Korea Information Science Society, 2001, vol. 28, no. 1, p. 238-240.
Y. Jung and E. Hwang, “Design of Relational Schema based XML Document Generator”, in Conference of Korea Information Science Society , 2001, vol. 28, no. 2, p. 226-228.
H. Kapadia, R. J. Figueiredo, and J. A. B. Fortes, “Enhancing the Scalability and Usability of Computational Grids via Logical User Accounts and Virtual File Systems”, in 10th Heterogeneous Computing Workshop (HCW2001), San Francisco, California, April 23, 2001, 2001.
R. J. Figueiredo and J. A. B. Fortes, “Hardware Support for Extracting Coarse-Grain Speculative Parallelism in Distributed Shared-Memory Multiprocessors”, in 30th International Conference on Parallel Processing, Valencia, Spain, September 3-7, 2001, 2001.
R. J. Figueiredo, et al., “Network-Computer for Computer Architecture Education: A Progress Report”, in American Society of Engineering Education (ASEE) Annual Conference, Albuquerque, New Mexico, June 2001, 2001.
H. Kapadia, J. A. B. Fortes, M. S. Lundstrom, and D. Royo, “PUNCH: A Computing Portal for the Virtual University”, International Journal on Engineering Education, vol. 17, 2001.
R. J. Figueiredo, N. H. Kapadia, and J. A. B. Fortes, “The PUNCH Virtual File System: Seamless Access to Decentralized Storage Services in a Computational Grid”, in 10th IEEE International Symposium on High Performance Distributed Computing (HPDC-10), San Francisco, California, August 7”9, 2001, 2001.
R. J. Figueiredo, N. Kapadia, and J. A. B. Fortes, “Towards Coordinated Work on the Grid: Data Sharing Through Virtual File Systems”, in Mini-Workshop on Internet Process Coordination and Ubiquitous Computing, 2001.
R. J. Figueiredo, et al., “On the Use of Simulation and Parallelization Tools in Computer Architecture and Programming Courses”, Computers in Education Journal, vol. 10, no. 1, p. 19-27, 2001.

2000

R. J. Figueiredo and J. A. B. Fortes, “Impact of Heterogeneity on DSM Performance”, in 6th International Symposium on High-Performance Computer Architecture (HPCA6), 2000.
R. J. Figueiredo, J. Bradford, and J. A. B. Fortes, “Improving the Performance of Heterogeneous DSMs via Multithreading”, in 4th International Meeting on Vector and Parallel Processing (VECPAR 2000), 2000.
S. Adabala, N. H. Kapadia, and J. ‘A. B. Fortes, “Interfacing Wide-Area Network Computing and Cluster Management Software: Condor, DQS, and PBS via PUNCH”, in 9th IEEE International Symposium on High Performance Distributed Computing, 2000.
R. J. Figueiredo, et al., “A Network-Computing Infrastructure for Tool Experimentation Applied to Computer Architecture Education”, in 27th Annual International Symposium on Computer Architecture (ISCA’2000) – Workshop on Computer Architecture Education, Vancouver, Canada, 2000.
S. Adabala, N. H. Kapadia, and J. A. B. Fortes, “Performance and Interoperability Issues in Incorporating Cluster Management Systems within a Wide-Area Network Computing Environment”, in Supercomputing 2000: High Performance Networking and Computing, Dallas, Texas, November 2000, 2000.
H. Kapadia, R. J. O. Figueiredo, and J. A. B. Fortes, “Punch: web portal for running tools”, IEEE MICRO (special issue on Computer Architecture Education), vol. 20, p. 38-47, 2000.
H. Kapadia, J. A. B. Fortes, and M. S. Lundstrom, “The Purdue University Network-Computing Hubs: Running Unmodified Simulation Tools via the WWW”, ACM Transactions on Modeling and Computer Simulation (TOMACS), vol. 10, p. 39-57, 2000.
R. Subramanyan, J. Miguel-Alonso, and J. A. B. Fortes, “A Scalable SNMP-Based Distributed Monitoring System For Heterogeneous Network Computing”, in Supercomputing 2000: High Performance Networking and Computing, Dallas, Texas, 2000.
H. Park, N. H. Kapadia, R. J. Figueiredo, R. Eigenmann, and J. A. B. Fortes, “Towards an Integrated, Web-executable Parallel Programming Tool Environment”, in Supercomputing 2000: High Performance Networking and Computing, Dallas, Texas, November 2000, 2000.
R. J. Figueiredo, et al., “On the Use of Simulation and Parallelization Tools in Computer Architecture and Programming Courses”, in 2000 American Society of Engineering Education (ASEE) Annual Conference, St. Louis, Missouri, 2000.

1999

J. A. B. Fortes, et al., “On the Integration of Computer Architecture and Programming Tools into Computer Curricula”, in 1999 ASEE Conference, 1999.
T. J. Downar, R. Eigenmann, J. A. B. Fortes, and N. Kapadia, “Issues and Approaches in Parallel Multi-Component and Multi-Physics Simulations”, in International Conference on Parallel and Distributed Processing Techniques and Applications, 1999.
N. H. Kapadia, J. Fortes, and C. E. Brodley, “Predictive Application-Performance Modeling in a Computational Grid Environment,”, 8th IEEE International Symposium on High Performance Distributed Computing. 1999.
N. H. Kapadia and J. A. B. Fortes, “PUNCH: An Architecture for Web-Enabled Wide-Area Network-Computing”, Cluster Computing: The Journal of Networks, Software Tools and Applications, vol. 2, p. 153-164, 1999.
N. H. Kapadia and J. A. B. Fortes, “Statewide Enterprise Computing with the Purdue University Network Computing Hubs”, in 1st International Conference on Enterprise Information Systems (ICEIS’99), 1999.
H. Cam and J. A. B. Fortes, “Work-efficient Routing Algorityhms for Rearrangable Symmetrical Networks”, IEEE Transactions on Parallel and Distributed Systems, vol. 10, p. 733-741, 1999.
S. Lunsstrom, G. W. Neudeck, J. A. B. Fortes, N. Kapadia, and C. Takoudis, “WWW-Based Computation in Microelectronics Computation and Research”, 13th Biennial University Government Industry Microelectronics Symposium. 1999.

1998

H. J. Lee and J. A. B. Fortes, “Automatic Generation of Modular Time-Space Mappings and Data Alignments”, Journal of VLSI Signal Processing, vol. 19, p. 195-208, 1998.
Z. Ben-Miled, J. A. B. Fortes, R. Eigenmann, and V. Taylor, “On the Cost-efficiency of Hierarchical Heterogeneous Machines for Compiler-and Hand-Parallelized Applications”, International Journal of Parallel and Distributed Systems and Networks, vol. 1, p. 193-203, 1998.
N. H. Kapadia and J. A. B. Fortes, “On the Design of a Demand-Based Network-Computing System: the Purdue University Network-Computing Hubs,”, in 7th International Symposium on High Performance Distributed Computing (HPDC-7), 1998.
J. Miguel Alonso, A. Arruabarrena, R. Beivide, and J. A. B. Fortes, “An Evaluation of Implementations of the CMB Parallel Simulation Algorithm on Distributed Memory Multicomputers”, Journal of Systems Architecture, vol. 44, no. 6-7, p. 519”545, 1998.
N. Khanna, J. A. B. Fortes, and S. Y. Nof, “A Formalism to Structure and Parallelize the Integration of Cooperative Engineering Design Tasks”, IIE Transactions, vol. 30, no. 1, p. 1-15, 1998.
R. J. Figueiredo and J. A. B. Fortes, “Impact of Computing-in-Memory on the Performance of Processor-And-Memory Hierarchies”, in 11th International Conference on Parallel and Distributed Computing Systems (PDCS-98), 1998.
N. H. Kapadia, J. P. Robertson, and J. A. B. Fortes, “Interface Issues in Running Computer Architecture Tools via the World-Wide Web”, in Workshop on Computer Architecture Education (WCAE-98), 1998.
P. Bradford and J. A. B. Fortes, “Performance and Memory-Access Characterization of Data Mining Applications,”, in 31st Annual Symposium on Micro-architecture – Workshop on Workload Characterization, 1998.
N. H. Kapadia, C. Brodley, J. A. B. Fortes, and M. Lundstrom, “Resource-Usage Prediction for Demand-Based Network-Computing”, in Workshop on Advances in Parallel and Distributed Systems (APADS), 1998.
R. J. Figueiredo, J. A. B. Fortes, and B. Z. Miled, “Spatial Data Locality with Respect to Degree of Parallelism in Processor-And-Memory Hierarchies,”, in 3rd International Meeting on Vector and Parallel Processing (VECPAR98), 1998.

1997

H. J. Lee and J. A. B. Fortes, “Automatic Generation of Injective Modular Mappings”, in International Conference on Parallel Processing, 1997.
H. J. Lee and J. A. B. Fortes, “Communication-minimal Partitioning and Data Alignment for Affine Nested Loops”, The Computer Journal, vol. 40, p. 302-310, 1997.
V. Shah and J. A. B. Fortes, “Effects of Dynamic Task Distributions on the Performance of a Class of Irregular Computations”, in 1997 International Conference on Parallel Processing, 1997.
V. Shah and J. A. B. Fortes, “Efficient Techniques for Performing an Irregular Computation on Distributed Memory Machines”, International Journal of Systems Science, vol. 28, no. 11, p. 1101-1113, 1997.
H. J. Lee, J. Robertson, and J. A. B. Fortes, “Generalized Cannon’s Algorithm for Parallel Matrix Multiplication”, 11th ACM International Conference on Supercomputing. p. 44-51, 1997.
M. Kandaswamy, V. Taylor, R. Eigenmann, and J. A. B. Fortes, “Implicit Finite Element Applications: A Case for Matching the Number of Processors to the Dynamics of the Program Execution”, 8th SIAM Conference on Parallel Processing. 1997.
H. J. Lee and J. A. B. Fortes, “Modular Mappings and Data Distribution Independent Computations”, Parallel Processing Letters, vol. 7, no. 2, p. 169-180, 1997.
H. Kapadia, M. S. Lundstrom, J. A. B. Fortes, and K. Rooy, “Network-Based Simulation Laboratories for Microelectronics Systems Design and Education”, International Conference on Microelectronic Systems Education. p. 23-24, 1997.
H. Kapadia, J. A. B. Fortes, and M. S. Lundstrom, “The Semiconductor Simulation Hub: A Network-Based Microelectronics Simulation Laboratory”, 12th Biennial IEEE University Government Industry Microelectronics Symposium. p. 72-77, 1997.
Z. B. Miled, J. A. B. Fortes, R. Eigenmann, and V. Taylor, “A Simulation-based Cost-efficiency Study of Hierarchical Heterogeneous Machines for Compiler- and Hand-Parallelized Applications”, in 9th IASTED International Conference on Parallel and Distributed Computing Systems (PDCS’97), 1997.
Z. B. Miled, J. A. B. Fortes, R. Eigenmann, and V. Taylor, “Towards the Design of a Heterogeneous Hierarchical Machine: A Simulation Approach”, 30th Simulation Conference. 1997.

1996

H. J. Lee and J. A. B. Fortes, “Automatic Generation of Modular Mappings”, International Conference on Application-Specific Systems, Architectures and Processors. p. 155-164, 1996.
S. Lundstrom, N. Kapadia, and J. A. B. Fortes, “The Computational Electronics Hub: A Network-Based Simulation Laboratory”, Workshop on Materials and Process Research and the Information Highway. 1996.
M. Kandaswamy, et al., “The Design of a Hierarchical Processors-and-Memory Architecture for High Performance Computing”, 6th Symposium on the Frontiers of Massively Parallel Computation (FRONTIERS ’96) – Workshop on The Petaflops Frontier. 1996.
J. Miguel Alonso, A. Arruabarrena, R. Beivide, and J. A. B. Fortes, “An Empirical Evaluation of Techniques for Parallel Discrete-event Simulation of Interconnection Networks”, 4th Euro-micro Workshop on Parallel and Distributed Processing. 1996.
Z. B. Miled and J. A. B. Fortes, “A Heterogeneous Hierarchical Solution to Cost-efficient High Performance Computing”, 8th IEEE Symposium on Parallel and Distributed Processing. 1996.
Z. B. Miled, R. Eigenmann, J. A. B. Fortes, and V. Taylor, “Hierarchical Processors-and-Memory Architecture for High Performance Computing”, Sixth Symposium on the Frontiers of Massively Parallel Computation (FRONTIERS ’96) – Workshop on The Petaflops Frontier. 1996.
V. Shah and J. A. B. Fortes, “A Library-based Approach to Symbolic Polynomial Manipulation on Distributed Memory Machines”, 8th IASTED Conference on Parallel and Distributed Computing Systems. p. 233-237, 1996.
H. Kapadia, M. S. Lundstrom, and J. A. B. Fortes, “A Network-based Simulation Hub for Microelectronic Technologies CAD”, IEEE Computer Society 1996 Annual Workshop on VLSI. 1996.
V. Shah and J. A. B. Fortes, “A Quasi-barrier Technique to Improve Performance of an Irregular Application”, 6th Symposium on the Frontiers of Massively Parallel Computation. p. 263-270, 1996.

1995

H. Kapadia and J. A. B. Fortes, “Block-Row Sparse Matrix-Vector Multiplication on SIMD Machines”, in 1995 International Conference on Parallel Processing, 1995, vol. III.
H. J. Lee and J. A. B. Fortes, “Communication-minimal Partitioning and Data Alignment of BLAS-like Algorithms”, in 1995 International Conference on Parallel Processing, 1995, vol. III.
H. J. Lee and J. A. B. Fortes, “Data Alignments for Modular Time-Space Mappings of BLAS-like Algorithms”, in Application Specific Array Processors, 1995. Proceedings., International Conference, 1995.
H. Cam and J. A. B. Fortes, “A Fast VLSI-efficient Self-routing Permutation Network”, IEEE Transactions on Computers, vol. 44, 1995.
H. Cam and J. A. B. Fortes, “Frames: a Simple Characterization of Permutations Realized by Frequently Used Networks”, IEEE Transactions on Computers, vol. 44, 1995.
H. Kapadia, B. Lichtenberg, J. A. B. Fortes, J. L. Gray, H. J. Siegel, and K. J. Webb, “Parallel Solution of Unstructured Sparse Finite Element Equations”, Symposium on Antennas and Propagation, vol. 2. p. 1330-1333, 1995.
V. Shah and J. A. B. Fortes, “Relaxation and Hybrid Approaches to Gröbner Basis Computation on Distributed Memory Machines”, in 1995 International Conference on Parallel Processing, 1995, vol. III.
J. Lee and J. A. B. Fortes, “Toward Data Distribution Independent Parallel Matrix Multiplication”, in Parallel Processing Symposium, 1995. Proceedings., 9th International, 1995.
H. Cam and J. A. B. Fortes, “Work-efficient Algorithms for Rearrangeable Symmetrical Networks”, 10th International Symposium on Computer and Information Sciences. p. 353-360, 1995.

1994

Z. Ben-Miled, J. J. Tiemann, W. A. Helbig, and J. A. B. Fortes, “On the Design of In-phase and Quadrature Filters for Delay Compensation”, IEEE Transactions on Signal Processing, vol. 42, 1994.
B. Armstrong, H. J. Siegel, W. E. Cohen, T. Min, H. G. Dietz, and J. A. B. Fortes, “Dynamic task migration from SIMD to SPMD virtual machines”, in Parallel Processing, 1994. ICPP 1994. International Conference , 1994, vol. 2.
Boulet and J. A. B. Fortes, “Experimental evaluation of affine schedules for matrix multiplication on the MasPar architecture “, in Massively Parallel Computing Systems, 1994., Proceedings of the First International Conference , 1994.
H. J. Lee and J. A. B. Fortes, “On the Injectivity of Modular Mappings”, in Application Specific Array Processors, 1994. Proceedings. International Conference, 1994.
Shang, M. T. O’Keefe, and J. A. B. Fortes, “On loop transformations for generalized cycle shrinking”, Parallel and Distributed Systems, IEEE Transactions , vol. 5, no. 2, 1994.
Llosa, M. Valero, J. A. B. Fortes, and E. Ayguade, “Using Sacks to Organize Registers in VLIW Machines”, in Proceedings of the Third joint International Conference on Vector and Parallel Processing, 1994.

1993

Saghi, H. J. Siegel, and J. A. B. Fortes, “On the Practical Application of a Quantitative Model of System Reconfiguration Due to a Fault “, in Parallel Processing, 1993. ICPP 1993. International Conference, 1993, vol. 3.

1992

Yang, W. Shang, and J. A. B. Fortes, “Conflict-Free Scheduling of Nested Loop Algorithms on Lower Dimensional Processor Arrays”, in Parallel Processing Symposium, 1992. Proceedings., Sixth International, 1992.
Rau, J. A. B. Fortes, and H. J. Siegel, “Destination Tag Routing Techniques Based on a State Model for the IADM Network”, IEEE Transactions on Computers , vol. 41, no. 3, p. 274-285, 1992.
Lopez-Benitez and J. A. B. Fortes, “Detailed Modeling and Reliability Analysis of Fault-Tolerant Processor Arrays”, IEEE Transactions on Computers, vol. 41, 1992.
H. Cam and J. A. B. Fortes, “Fault-Tolerant Self-Routing Permutation Networks”, in International Conference on Parallel Processing, 1992, vol. I.
W. Shang and J. A. B. Fortes, “Independent partitioning of algorithms with uniform dependencies”, Computers, IEEE Transactions on , vol.41, no.2, pp.190,206, Feb 1992, 1992.
T. O’Keefe and J. A. B. Fortes, “On the Relationship Between Two Systolic Array Design Methodologies”, IEEE Transactions on Computers, vol. 42, 1992.
W. Shang and J. A. B. Fortes, “On time mapping of uniform dependence algorithms into lower dimensional processor arrays”, Parallel and Distributed Systems, IEEE Transactions on , vol.3, no.3, pp.350,363, May 1992, 1992.

1991

W. Shang and J. A. B. Fortes, “Exploiting Parallelism with Linear Schedules”, in International Conference for Young Computer Scientists, Beijing, China, 1991.
W. Shang and J. A. B. Fortes, “Mapping algorithms onto parallel architectures: time schedules”, in Design and Application of Parallel Digital Processors, 1991., Second International Specialist Seminar , 1991.
W. Shang and J. A. B. Fortes, “Time optimal linear schedules for algorithms with uniform dependencies”, IEEE Transactions on Computers, vol. 40, p. 723-742, 1991.

1990

Chean and J. A. B. Fortes, “The Full-Use-of-Suitable-Spaces (FUSS) Approach to Hardware Reconfiguration for Fault-Tolerance Processor Arrays”, IEEE Transactions on Computers, vol. 39, p. 564-571, 1990.
H. Cam and J. A. B. Fortes, “Rearrangeability of shuffle-exchange networks”, in Frontiers of Massively Parallel Computation, 1990. Proceedings., 3rd Symposium, 1990.
Chean and J. A. B. Fortes, “A Taxonomy of Reconfiguration Techniques for Fault-Tolerant Processor Arrays”, IEEE Computer, p. 55-69, 1990.

1989

W. Shang and J. A. B. Fortes, “On the Optimality of Linear Schedules”, Journal of VLSI Signal Processing, vol. 1, p. 209-220, 1989.

1988

W. Carlson and J. A. B. Fortes, “On the Performance of Combined Dataflow and Control Flow Systems: Experiments Using Two Iterative Algorithms”, Journal of Parallel and Distributed Computing, p. 359-382, 1988.

1987

J. A. B. Fortes, “Status and Future of DEFT: A Design-for-Testability Expert Systems”, in IEEE Computer Society VLSI Workshop, 1987.
J. A. B. Fortes and B. W. Wah, “Systolic Arrays – From Concept to Implementation”, IEEE Computer, p. 12-17, 1987.

1986

J. A. B. Fortes, “Algorithm Reconfiguration Techniques for Gracefully Degradable Processor Arrays”, in International Workshop on Systolic Arrays, 1986.
T. O’Keefe and J. A. B. Fortes, “A Comparative Study of Two Systematic Design Methodologies for Systolic Arrays (Extended Version)”, International Workshop on Parallel Agorithms and Architectures. p. 313-324, 1986.
T. O’Keefe and J. A. B. Fortes, “A Comparative Study of Two Systematic Design Methodologies for Systolic Arrays”, International Conference on Parallel Processing. p. 672-675, 1986.
A. Samad and J. A. B. Fortes, “DEFT – A Design-for-Testability Expert Systems”, Fall Joint Computer Conference. p. 899-908, 1986.
T. O’Keefe and J. A. B. Fortes, “Degradable Processor Arrays”, International Conference on Parallel Processing. p. 672-675, 1986.
A. Samad and J. A. B. Fortes, “Explanation Capabilities in a Design-for-Testability Expert System”, International Test Conference (ITC’86). p. 954-963, 1986.
J. A. B. Fortes, V. M. Milutinovic, R. Dick, W. Helbig, and W. Moyers, “A High-Level Systolic Architecture for GaAs”, 19th Hawaii International Confernce on System Sciences (HICSS). p. 253-258, 1986.
M. Milutinovic, J. A. B. Fortes, and L. H. Jamieson, “A MISD Multiprocessor System for Real Time Computation of a Class of Discrete Fourier Transforms”, IEEE Transactions in Acoustics , vol. ASSP-34, no. Signal and Speech Processing, p. 1301-1310, 1986.
I. Moldovan and J. A. B. Fortes, “Partitioning and Mapping Algorithms into Fixed Size Systolic Arrays”, IEEE Transactions on Computers, vol. C-35, p. 1-13, 1986.

1985

J. A. B. Fortes and C. S. Raghavendra, “Gracefully Degradable Processor Arrays”, IEEE Transactions on Computers, vol. C-34, p. 1033-1045, 1985.
J. A. B. Fortes and D. I. Moldovan, “Parallelism Detection and Transformation Techniques Useful for VLSI Algorithms”, Journal of Parallel and Distributed Computing, p. 277-301, 1985.
J. A. B. Fortes, K. S. Fu, and B. Wah, “Systemic Approaches to the Design of Algorithmically Specified Systolic Arrays”, 1985 International Conference on Acoustics, Signal and Speech Processing, vol. 1. p. 300-303, 1985.
H. Zak and J. A. B. Fortes, “On the Systolization of Polynomial Matrix Manipulations”, Midcon/85. p. 23/5.1 – 23/5.8, 1985.

1984

J. A. B. Fortes and D. I. Moldovan, “Data Broadcasting in Linearly Scheduled Array Processors”, 11th International Symposium on Computer Architecture. p. 224-232, 1984.
J. A. B. Fortes and C. S. Raghavendra, “Dynamically Reconfigurable Fault Tolerant Array Processors”, 14th International Symposium on Fault-Tolerant Computing. p. 386-392, 1984.
I. Moldovan, C. I. Wu, and J. A. B. Fortes, “Mapping an Arbitratily Large QR Algorithm into a Fixed Size VLSI Array”, 1984 International Conference on Parallel Processing. p. 364-375, 1984.
M. Milutinovic, J. A. B. Fortes, and L. H. Jamieson, “A MISD Pultiprocessor System for Real Time Computation of a Class of Discrete Fourier Transforms”, 1984 Real Time Systems Symposium. p. 165-174, 1984.
J. A. B. Fortes and F. Parisi-Presicce, “Optimal Linear Shcedules for the Parallel Execution of Algorithms”, 1984 International Conference on Parallel Processing. p. 322-330, 1984.